Right, I think this is finally sorted.
I got a second hand OEM fuel pump from Germany, and without asking, the sender, an online parts shop, sent on a new set of points for it too, which was nice.
A mate who is an electronic engineer did the little bit of soldering involved and I was ready to rock.
So, I had established that even with gravity feed, the 3 and 4 cylinders seemed to be starved of fuel after a longer run at motorway speeds.
I checked the routing of the lines and the hoses to make sure there were no kinks or harsh bends.
Then, I went back to the original fuel cut-off relay too, from the CBR600 one. I installed the refurbished fuel pump with all the original hoses, though I did use a new fuel filter, noticing that it has a lot less internal surface filter area than the original, but the original did look a bit used so I took then chance.
It started up OK, idled nicely and after about five minutes all four were still purring happily.
On the way to work this morning, it went fine, no drop off, misfire or starvation.
I had a lunch meeting too, and though only a few kms away, it also went fine in this urban distance.
And on the way home too, I kept the pace up just to test things, and all seemed fine.
Fingers crossed, it is now OK.
So, I can only conclude that a combination of a slightly weak pattern pump combined with less than optimum pipework, as in three elbows, was resulting in low delivery to the 3 and 4 cylinders resulting in starvation.
Going back the way in symptoms as to why the fuel pump would cut out, I just don’t know.
But the coils in there are now the best from two sets, so maybe a weak coil, combined with losing the two cylinders on a fuel issue may have resulted in the signal to the cut-off relay being lost or weak, cutting out the pump and then the whole thing grinding to a halt.
Anyway, we live and learn.
On the plus side, though there is a substantial change in the feel of the lever, I like the effect of the Blackbird master cylinder to sharpen the action of the front brakes.
Now I just need to get my CBR wheels powder coated, clad in some modern tyres and fitted with the spacer kit.
UPDATE: Another boringly uneventful run into work this morning in double digit temperatures, wihch is pretty good for late January in Ireland 
Boring reliability would be very nice from now on.